PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012362-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ZF-HD
Protein Properties Length: 79aa    MW: 8297.38 Da    PI: 8.7785
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012362-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.12e-281974357
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                           ++ Y+eC+kNhAa++Gg+avDGC+Ef ++ g    + + l CaACgCHRnFHR  v
  SMil_00012362-RA_Salv 19 GIGYRECMKNHAANIGGYAVDGCREFSAAAGGReRSESELSCAACGCHRNFHRVAV 74
                           578************************998877688899**************765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.8E-252172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.2362273IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-142276IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.8E-232271IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MTKKVVVIGK EGSKISSSGI GYRECMKNHA ANIGGYAVDG CREFSAAAGG RERSESELSC  60
AACGCHRNFH RVAVASGFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593674.11e-22PREDICTED: mini zinc finger protein 2
RefseqXP_011087287.11e-22PREDICTED: mini zinc finger protein 2
SwissprotQ2Q4935e-21MIF3_ARATH; Mini zinc finger protein 3
SwissprotQ9CA516e-21MIF1_ARATH; Mini zinc finger protein 1
TrEMBLA0A068UUU81e-22A0A068UUU8_COFCA; Uncharacterized protein
STRINGGLYMA13G05380.25e-22(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11052486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.13e-21mini zinc finger 1